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  5. XM_003058030.1

XM_003058030.1 (MicpuC2_39273, 39273)


Aliases : MicpuC2_39273, 39273

Description : GUCT; Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000947 (OrthoFinder) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003058030.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020734.25 tig00020734_g13581.t1 DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.06 OrthoFinder
Cre02.g118300 30784864 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.04 OrthoFinder
Cz13g08080.t1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.09 OrthoFinder
Cz13g08090.t1 No alias Helicase, C-terminal; GUCT [Interproscan]. 0.11 OrthoFinder
OT_04G02790.1 No alias Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.15 OrthoFinder
OT_05G02140.1 No alias Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.11 OrthoFinder
PTI_09G04100.1 No alias GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.04 OrthoFinder
Sro1581_g283790.1 Contig585.g7354 Dependent RNA helicase 0.06 OrthoFinder
Transcript_contig_56946 56946 Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.02 OrthoFinder
Vocar.0033s0039.1 32886419 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.03 OrthoFinder
XM_002502463.1 MICPUN_58575, 58575 DEAD/DEAH box RNA helicase 0.02 OrthoFinder
XM_002507844.1 MICPUN_97749, 97749 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.14 OrthoFinder
lcl|BLLF01000392.1_cds_GFH11311.1_5788 HaLaN_06792, GFH11311 DEAD box RNA helicase CiRH75 0.05 OrthoFinder
lcl|BLLF01001583.1_cds_GFH20145.1_14622 HaLaN_17222, GFH20145 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.03 OrthoFinder
lcl|BLLF01002695.1_cds_GFH25028.1_19505 HaLaN_22919, GFH25028 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.05 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59107.1_6866 PRW59107 DEAD-box ATP-dependent RNA helicase 7 0.1 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492593.1_9286 KAA8492593 Nucleolar RNA helicase 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 153 329
IPR001650 Helicase_C 371 479
IPR012562 GUCT 575 674
No external refs found!