XM_003057907.1 (MicpuC2_70854, 70854)

Aliases : MicpuC2_70854, 70854

Description : RNA pseudouridylate synthase

Gene families : OG_01_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_003057907.1
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
Sro102_g052200.1	Contig319.g4264	Pseudouridine synthase C	0.01	OrthoFinder
SymbC1.scaffold27233.1	27233.1	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.01	OrthoFinder
TP11G00520.1	No alias	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.03	OrthoFinder
XM_002500429.1	MICPUN_56859, 56859	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.02	OrthoFinder
XM_002508549.1	MICPUN_62148, 62148	RRNA/tRNA pseudouridine synthase	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Enrichment
MF	GO:0004743	pyruvate kinase activity	IEP	Enrichment
MF	GO:0005509	calcium ion binding	IEP	Enrichment
CC	GO:0005667	transcription regulator complex	IEP	Enrichment
BP	GO:0005975	carbohydrate metabolic process	IEP	Enrichment
BP	GO:0005996	monosaccharide metabolic process	IEP	Enrichment
BP	GO:0006006	glucose metabolic process	IEP	Enrichment
BP	GO:0006265	DNA topological change	IEP	Enrichment
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Enrichment
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Enrichment
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Enrichment
BP	GO:0019318	hexose metabolic process	IEP	Enrichment
MF	GO:0030955	potassium ion binding	IEP	Enrichment
MF	GO:0031420	alkali metal ion binding	IEP	Enrichment
MF	GO:0043169	cation binding	IEP	Enrichment
MF	GO:0046872	metal ion binding	IEP	Enrichment
BP	GO:0071586	CAAX-box protein processing	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	72	265

External Links

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