1. Home
  2. Species
  3. Micromonas pusilla
  4. Sequence
  5. XM_003057675.1

XM_003057675.1 (MicpuC2_16166, 16166)


Aliases : MicpuC2_16166, 16166

Description : DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, N-terminal; DNA ligase, ATP-dependent, C-terminal [Interproscan].


Gene families : OG_01_0000772 (OrthoFinder) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003057675.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000754.31 tig00000754_g3915.t2 DNA ligase 1 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cre07.g325716 30774592 DNA damage response.DNA repair mechanisms.base excision... 0.08 OrthoFinder
Cz01g42120.t1 No alias DNA ligase, ATP-dependent, C-terminal; DNA ligase,... 0.03 OrthoFinder
Dusal.0019s00027.1 33192546 DNA ligase, ATP-dependent, central; DNA ligase,... 0.02 OrthoFinder
EOD41646 No alias Putative DNA ligase [Ensembl]. 0.07 OrthoFinder
OT_10G00620.1 No alias DNA ligase, ATP-dependent, N-terminal; DNA ligase,... 0.07 OrthoFinder
Sro1100_g241250.1 Contig937.g9737 DNA ligase 1 0.06 OrthoFinder
Transcript_contig_55247 55247 DNA ligase, ATP-dependent, N-terminal; DNA ligase,... 0.02 OrthoFinder
Vocar.0003s0175.1 32889074 DNA ligase, ATP-dependent, N-terminal; DNA ligase,... 0.02 OrthoFinder
XM_002500180.1 MICPUN_78711, 78711 DNA ligase, ATP-dependent, central; DNA ligase,... 0.1 OrthoFinder
lcl|BLLF01000033.1_cds_GFH06321.1_798 HaLaN_00931, GFH06321 DNA ligase 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006333 chromatin assembly or disassembly IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0007021 tubulin complex assembly IEP Enrichment
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008184 glycogen phosphorylase activity IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0048487 beta-tubulin binding IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0061608 nuclear import signal receptor activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR012309 DNA_ligase_ATP-dep_C 538 649
IPR012310 DNA_ligase_ATP-dep_cent 311 513
IPR012308 DNA_ligase_ATP-dep_N 60 237
No external refs found!