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  5. XM_003055317.1

XM_003055317.1 (MicpuC2_49909, 49909)


Aliases : MicpuC2_49909, 49909

Description : Sec23/Sec24 beta-sandwich; Sec23/Sec24, helical domain; Sec23/Sec24, trunk domain; Zinc finger, Sec23/Sec24-type [Interproscan].


Gene families : OG_01_0000893 (OrthoFinder) Phylogenetic Tree(s): OG0000893_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003055317.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.3 tig00000829_g4645.t1 Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 OrthoFinder
Cre01.g035850 30788608, SEC24B Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder
Cre02.g091150 30786099, SEC24A Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 OrthoFinder
Cz06g26070.t1 No alias Sec23/Sec24, trunk domain; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
Cz15g00040.t1 No alias Sec23/Sec24, trunk domain; Sec23/Sec24 beta-sandwich;... 0.02 OrthoFinder
Dusal.0045s00020.1 33191659 Zinc finger, Sec23/Sec24-type; Sec23/Sec24, trunk domain... 0.02 OrthoFinder
EOD35905 No alias Sec23/Sec24 beta-sandwich; Sec23/Sec24, trunk domain... 0.01 OrthoFinder
OT_12G02410.1 No alias Sec23/Sec24 beta-sandwich; Sec23/Sec24, trunk domain;... 0.02 OrthoFinder
PTI_11G00980.1 No alias Gelsolin-like domain; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
Sro196_g083380.1 Contig3206.g25334 Transport protein SEC24 0.02 OrthoFinder
SymbC1.scaffold2378.2 2378.2 Zinc finger, Sec23/Sec24-type; Sec23/Sec24... 0.01 OrthoFinder
Vocar.0001s0725.1 32884529 Sec23/Sec24, trunk domain; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
lcl|BLLF01000072.1_cds_GFH07061.1_1538 HaLaN_01810, GFH07061 COP-II coat subunit 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499730.1_8683 KAA8499730 Protein transport protein Sec24-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
CC GO:0005856 cytoskeleton IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
MF GO:0016972 thiol oxidase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006896 Sec23/24_trunk_dom 328 564
IPR006900 Sec23/24_helical_dom 667 768
IPR012990 Sec23_24_beta_S 570 653
IPR006895 Znf_Sec23_Sec24 253 291
No external refs found!