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  5. XM_003055196.1

XM_003055196.1 (MicpuC2_13384, 13384)


Aliases : MicpuC2_13384, 13384

Description : Ribosomal protein S2 [Interproscan].


Gene families : OG_01_0002089 (OrthoFinder) Phylogenetic Tree(s): OG0002089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003055196.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cre10.g432800 30790737, RPSa Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder
Cz04g36090.t1 No alias Ribosomal protein S2 [Interproscan]. 0.07 OrthoFinder
Dusal.0160s00027.1 33188334 Ribosomal protein S2 [Interproscan]. 0.13 OrthoFinder
EOD15394 No alias 40S ribosomal protein SA, C-terminal domain; Ribosomal... 0.06 OrthoFinder
OT_03G03280.1 No alias 40S ribosomal protein SA, C-terminal domain; Ribosomal... 0.11 OrthoFinder
PTI_12G01500.1 No alias Ribosomal protein S2 [Interproscan]. 0.13 OrthoFinder
Sro120_g058380.1 Contig2411.g19716 40S ribosomal protein SA 0.15 OrthoFinder
TP03G06220.1 No alias Ribosomal protein S2 [Interproscan]. 0.11 OrthoFinder
Transcript_contig_79177 79177 Ribosomal protein S2 [Interproscan]. 0.02 OrthoFinder
Vocar.0008s0458.1 32897164 Ribosomal protein S2 [Interproscan]. 0.07 OrthoFinder
XM_002499866.1 MICPUN_107814, 107814 Ribosomal protein S2; 40S ribosomal protein SA,... 0.02 OrthoFinder
lcl|BLLF01000494.1_cds_GFH12355.1_6832 HaLaN_08023, GFH12355 40S ribosomal protein SA 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499119.1_8072 KAA8499119 40S ribosomal protein SA 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004129 cytochrome-c oxidase activity IEP Enrichment
MF GO:0004408 holocytochrome-c synthase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
CC GO:0005740 mitochondrial envelope IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Enrichment
MF GO:0016846 carbon-sulfur lyase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
CC GO:0031967 organelle envelope IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
CC GO:0031975 envelope IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043085 positive regulation of catalytic activity IEP Enrichment
BP GO:0044093 positive regulation of molecular function IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:0110154 RNA decapping IEP Enrichment
BP GO:0110156 methylguanosine-cap decapping IEP Enrichment
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 14 107
IPR001865 Ribosomal_S2 112 178
No external refs found!