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  5. XM_003054974.1

XM_003054974.1 (MicpuC2_50333, 50333)


Aliases : MicpuC2_50333, 50333

Description : DNA-directed RNA polymerase, RBP11-like dimerisation domain [Interproscan].


Gene families : OG_01_0000820 (OrthoFinder) Phylogenetic Tree(s): OG0000820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003054974.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cz02g18130.t1 No alias DNA-directed RNA polymerase, RBP11-like dimerisation... 0.01 OrthoFinder
Cz05g13120.t1 No alias DNA-directed RNA polymerase, RBP11-like dimerisation... 0.04 OrthoFinder
EOD41842 No alias DNA-directed RNA polymerase, RBP11-like dimerisation... 0.03 OrthoFinder
OT_07G01990.1 No alias DNA-directed RNA polymerase, RBP11-like dimerisation... 0.03 OrthoFinder
PTI_09G00380.1 No alias DNA-directed RNA polymerase, RBP11-like dimerisation... 0.02 OrthoFinder
SymbC1.scaffold513.1 513.1 DNA-directed RNA polymerase, RBP11-like dimerisation... 0.01 OrthoFinder
XM_002503873.1 MICPUN_76999, 76999 DNA-directed RNA polymerase, RBP11-like dimerisation... 0.04 OrthoFinder
lcl|BLLF01001064.1_cds_GFH16877.1_11354 HaLaN_13393, GFH16877 RNA_pol_L_2 domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Enrichment
CC GO:0035145 exon-exon junction complex IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR009025 RBP11-like_dimer 32 138
No external refs found!