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  5. XM_003054880.1

XM_003054880.1 (MicpuC2_13206, 13206)


Aliases : MicpuC2_13206, 13206

Description : Zinc finger, C3HC4 RING-type; E3 ligase, CCCH-type zinc finger; RNA-binding, Nab2-type zinc finger [Interproscan].


Gene families : OG_01_0002730 (OrthoFinder) Phylogenetic Tree(s): OG0002730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003054880.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_55952 55952 Zinc finger, CCCH-type; E3 ligase, CCCH-type zinc finger... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 193 254
IPR041367 Znf-CCCH_4 34 53
IPR041367 Znf-CCCH_4 6 25
No external refs found!