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  5. XM_003054785.1

XM_003054785.1 (MicpuC2_30629, 30629)


Aliases : MicpuC2_30629, 30629

Description : Ribosomal protein L11, N-terminal; Ribosomal protein L11, C-terminal [Interproscan].


Gene families : OG_01_0003120 (OrthoFinder) Phylogenetic Tree(s): OG0003120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_003054785.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001339.27 tig00001339_g8284.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder
Cre12.g528750 30793215, RPL12 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder
Cz05g19100.t1 No alias Ribosomal protein L11, C-terminal [Interproscan]. 0.03 OrthoFinder
Cz05g19110.t1 No alias Ribosomal protein L11, N-terminal [Interproscan]. 0.11 OrthoFinder
Dusal.3410s00001.1 33201679 Ribosomal protein L11, N-terminal; Ribosomal protein... 0.02 OrthoFinder
EOD41717 No alias Ribosomal protein L11, C-terminal [Interproscan]. 0.09 OrthoFinder
OT_03G05460.1 No alias Ribosomal protein L11, N-terminal; Ribosomal protein... 0.13 OrthoFinder
PTI_14G02490.1 No alias Ribosomal protein L11, N-terminal; Ribosomal protein... 0.16 OrthoFinder
Sro82_g043980.1 Contig4032.g30989 60S ribosomal protein L12 (Fragment) 0.14 OrthoFinder
SymbC1.scaffold5155.5 5155.5 Ribosomal protein L11, N-terminal [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold6598.3 6598.3 Ribosomal protein L11, C-terminal; Ribosomal protein... 0.01 OrthoFinder
SymbC1.scaffold7628.1 7628.1 Ribosomal protein L11, C-terminal; Ribosomal protein... 0.02 OrthoFinder
TP02G01920.1 No alias Ribosomal protein L11, C-terminal; Ribosomal protein... 0.13 OrthoFinder
Vocar.0037s0035.1 32897589 Ribosomal protein L11, C-terminal; Ribosomal protein... 0.02 OrthoFinder
XM_002507253.1 MICPUN_106714, 106714 Ribosomal protein L11, N-terminal; Ribosomal protein... 0.11 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45184.1_1960 PRW45184 60S ribosomal L12-1 0.11 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495636.1_1634 KAA8495636 60S ribosomal protein L12 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR020783 Ribosomal_L11_C 75 144
IPR020784 Ribosomal_L11_N 13 70
No external refs found!