1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002508848.1

XM_002508848.1 (MICPUN_72176, 72176)


Aliases : MICPUN_72176, 72176

Description : Pseudouridine synthase, RsuA/RluA [Interproscan].


Gene families : OG_01_0000212 (OrthoFinder) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002508848.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020710.129 tig00020710_g13393.t1 RNA processing.RNA... 0.02 OrthoFinder
Cz07g07220.t1 No alias RNA-binding S4 domain [Interproscan]. 0.04 OrthoFinder
Dusal.0755s00004.1 33194805 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Transcript_contig_57854 57854 RNA-binding S4 domain [Interproscan]. 0.01 OrthoFinder
XM_003056960.1 MicpuC2_56706, 56706 RNA-binding S4 domain; Pseudouridine synthase, RsuA/RluA... 0.03 OrthoFinder
XM_003062138.1 MicpuC2_6566, 6566 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07162.1_1639 HaLaN_01923, GFH07162 S4 RNA-binding domain-containing protein 0.02 OrthoFinder
lcl|BLLF01001183.1_cds_GFH17660.1_12137 HaLaN_14340, GFH17660 Pseudouridine synthase 0.04 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44607.1_2322 PRW44607 Ribosomal large subunit pseudouridine synthase B 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 5 127
No external refs found!