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  5. XM_002508558.1

XM_002508558.1 (MICPUN_96644, 96644)


Aliases : MICPUN_96644, 96644

Description : Ferredoxin, chloroplast precursor (PETF3)


Gene families : OG_01_0000864 (OrthoFinder) Phylogenetic Tree(s): OG0000864_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002508558.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.35 tig00000194_g14763.t1 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre07.g334800 30775099, FDX4 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana 0.08 OrthoFinder
Cre14.g626700 30776503, PETF Photosynthesis.photophosphorylation.linear electron... 0.02 OrthoFinder
Cz13g08015.t1 No alias 2Fe-2S ferredoxin-type iron-sulfur binding domain [Interproscan]. 0.03 OrthoFinder
OT_06G03240.1 No alias 2Fe-2S ferredoxin-type iron-sulfur binding domain [Interproscan]. 0.09 OrthoFinder
OT_17G00360.1 No alias 2Fe-2S ferredoxin-type iron-sulfur binding domain [Interproscan]. 0.09 OrthoFinder
Transcript_contig_79847 79847 2Fe-2S ferredoxin-type iron-sulfur binding domain [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0012.1 32890573 Ferredoxin, chloroplast transit peptide; 2Fe-2S... 0.04 OrthoFinder
Vocar.0013s0256.1 32896323 2Fe-2S ferredoxin-type iron-sulfur binding domain [Interproscan]. 0.03 OrthoFinder
Vocar.0022s0106.1 32891766 Ferredoxin, chloroplast transit peptide; 2Fe-2S... 0.04 OrthoFinder
XM_003059839.1 MicpuC2_27711, 27711 Ferredoxin, chloroplast precursor (PETF1) 0.09 OrthoFinder
XM_003064089.1 MicpuC2_30100, 30100 Ferredoxin, chloroplast precursor (PETF3) 0.09 OrthoFinder
lcl|BLLF01001282.1_cds_GFH18315.1_12792 HaLaN_15094, GFH18315 Ferredoxin 0.05 OrthoFinder
lcl|BLLF01002947.1_cds_GFH25891.1_20368 HaLaN_23934, GFH25891 Ferredoxin 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20534.1_5466 PRW20534 Chloroplast ferredoxin 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Enrichment
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
MF GO:0070567 cytidylyltransferase activity IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001041 2Fe-2S_ferredoxin-type 47 119
No external refs found!