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  5. XM_002508337.1

XM_002508337.1 (MICPUN_102547, 102547)


Aliases : MICPUN_102547, 102547

Description : GTP binding domain [Interproscan].


Gene families : OG_01_0002375 (OrthoFinder) Phylogenetic Tree(s): OG0002375_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002508337.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cre17.g747347 30782378 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana 0.09 OrthoFinder
Cz15g21030.t1 No alias GTP binding domain [Interproscan]. 0.04 OrthoFinder
EOD37358 No alias GTP binding protein [Ensembl]. 0.02 OrthoFinder
OT_03G05070.1 No alias Hypothetical protein 0.1 OrthoFinder
PTI_21G02750.1 No alias GTP binding domain [Interproscan]. 0.02 OrthoFinder
Sro155_g070500.1 Contig395.g5357 DAR GTPase 3, chloroplastic 0.04 OrthoFinder
XM_003062915.1 MicpuC2_21980, 21980 GTP binding domain [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494100.1_3964 KAA8494100 DAR GTPase 3, chloroplastic 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006073 GTP-bd 140 205
No external refs found!