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  5. XM_002508265.1

XM_002508265.1 (MICPUN_60933, 60933)


Aliases : MICPUN_60933, 60933

Description : SNF2 super family (RAD54)


Gene families : OG_01_0000285 (OrthoFinder) Phylogenetic Tree(s): OG0000285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002508265.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020556.80 tig00020556_g11046.t1 Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020614.39 tig00020614_g12152.t1 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder
Cre10.g430950 30790110 Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder
Cz01g45220.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.05 OrthoFinder
Dusal.0033s00033.1 33202502 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD16796 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD21201 No alias SNF2-related, N-terminal domain [Interproscan]. 0.05 OrthoFinder
EOD37408 No alias SNF2-related, N-terminal domain [Interproscan]. 0.05 OrthoFinder
EOD38972 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.06 OrthoFinder
OT_09G01280.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
PTI_14G01170.1 No alias Helicase, C-terminal; Bromodomain; SNF2-related,... 0.03 OrthoFinder
Sro368_g128060.1 Contig2761.g22245 ISWI chromatin-remodeling complex ATPase ISW2 0.01 OrthoFinder
Sro795_g203520.1 Contig372.g5045 DNA repair and recombination protein RAD54-like (Fragment) 0.02 OrthoFinder
XM_003057874.1 MicpuC2_57638, 57638 SNF2 super family (RAD54B) 0.03 OrthoFinder
XM_003059512.1 MicpuC2_1194, 1194 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493509.1_4271 KAA8493509 DNA repair and recombination protein RAD54B 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0004797 thymidine kinase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0019136 deoxynucleoside kinase activity IEP Enrichment
MF GO:0019206 nucleoside kinase activity IEP Enrichment
CC GO:0030915 Smc5-Smc6 complex IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
CC GO:0106068 SUMO ligase complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 544 653
IPR000330 SNF2_N 199 485
No external refs found!