1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002507989.1

XM_002507989.1 (MICPUN_102027, 102027)


Aliases : MICPUN_102027, 102027

Description : Root UVB sensitive family [Interproscan].


Gene families : OG_01_0000194 (OrthoFinder) Phylogenetic Tree(s): OG0000194_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002507989.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cre09.g396050 30780666 Protein root UVB sensitive 4 OS=Arabidopsis thaliana 0.02 OrthoFinder
Dusal.0223s00026.1 33201358 Root UVB sensitive family [Interproscan]. 0.03 OrthoFinder
Dusal.0712s00004.1 33190987 Root UVB sensitive family [Interproscan]. 0.03 OrthoFinder
Sro846_g210190.1 Contig3685.g28435 RUS1 family protein C16orf58 homolog 0.02 OrthoFinder
TP15G01220.1 No alias Root UVB sensitive family [Interproscan]. 0.03 OrthoFinder
Transcript_contig_57672 57672 Root UVB sensitive family [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492218.1_5401 KAA8492218 Protein root UVB sensitive 1, chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR006968 RUS_fam 186 426
No external refs found!