XM_002506682.1 (MICPUN_64827, 64827)

Aliases : MICPUN_64827, 64827

Description : Cleavage stimulation factor subunit 2, hinge domain; Transcription termination and cleavage factor, C-terminal domain; RNA recognition motif domain [Interproscan].

Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_002506682.1
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
Dusal.0028s00033.1	33198481	RNA recognition motif domain [Interproscan].	0.01	OrthoFinder
EOD23362	No alias	RNA recognition motif domain [Interproscan].	0.05	OrthoFinder
OT_01G05710.1	No alias	RNA recognition motif domain; Cleavage stimulation...	0.03	OrthoFinder
PTI_05G02190.1	No alias	RNA recognition motif domain [Interproscan].	0.01	OrthoFinder
Vocar.0001s0729.1	32886056	RNA recognition motif domain [Interproscan].	0.02	OrthoFinder
Vocar.0007s0376.1	32887918	Cleavage stimulation factor subunit 2, hinge domain; RNA...	0.02	OrthoFinder
lcl\|LHPG02000008.1_cds_PRW56872.1_9478	PRW56872	RNA recognition motif-containing	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	8	78
IPR026896	CSTF_C	277	310
IPR025742	CSTF2_hinge	134	192

External Links

No external refs found!

XM_002506682.1 (MICPUN_64827, 64827)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation