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  5. XM_002506245.1

XM_002506245.1 (MICPUN_92498, 92498)


Aliases : MICPUN_92498, 92498

Description : Chlorophyll a/b-binding protein CP29, chloroplast precursor (LHCB4)


Gene families : OG_01_0000013 (OrthoFinder) Phylogenetic Tree(s): OG0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002506245.1
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Cre01.g066917 30788321, LHCBM1 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder
Cre03.g156900 30787808, LHCBM5 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder
Cre04.g232104 30791553, LHCBM3 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder
Cre06.g272650 30779881, LHCA8 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder
Cre06.g278213 30779171, LHCA6 Chlorophyll a-b binding protein P4, chloroplastic... 0.05 OrthoFinder
Cre06.g283050 30779127, LHCA1 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder
Cre06.g283950 30779716, LHCBM4 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder
Cre06.g284250 30779962, LHCBM8 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder
Cre06.g285250 30779463, LHCBM6 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder
Cre07.g344950 30774737, LHCA9 Photosystem I chlorophyll a/b-binding protein 5,... 0.06 OrthoFinder
Cre10.g425900 30790196, LHCA5 Chlorophyll a-b binding protein 4, chloroplastic... 0.05 OrthoFinder
Cre10.g452050 30790835, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 OrthoFinder
Cre11.g467573 30776039, LHCA3 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder
Cre12.g508750 30791684, LHCA2 Photosystem I chlorophyll a/b-binding protein 6,... 0.06 OrthoFinder
Cre12.g548400 30793460, LHCBM2 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder
Cre12.g548950 30793494, LHCBM7 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder
Cre16.g673650 30777655, LHCB5 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder
Cre16.g687900 30778224, LHCA7 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder
Cre17.g720250 30782643, LHCB4 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder
Cz01g23030.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Cz03g26240.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz04g04130.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz04g09210.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz07g02100.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
Cz08g11160.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Cz09g32070.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Cz10g10160.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz12g16070.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz13g03240.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz15g09060.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz15g17110.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Cz16g14150.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Dusal.0008s00007.1 33198903 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Dusal.0017s00032.1 33200485 Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Dusal.0027s00004.1 33191535 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Dusal.0048s00036.1 33189483 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Dusal.0081s00007.1 33198263 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Dusal.0125s00005.1 33191827 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Dusal.0152s00006.1 33186191 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Dusal.0206s00001.1 33187265 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Dusal.3971s00001.1 33198839 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
OT_01G04980.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
OT_02G03050.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
OT_02G04550.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_03G04590.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_03G04600.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_03G04960.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
OT_05G03910.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_07G02590.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_09G04490.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_11G01010.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
OT_14G01300.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_16G00460.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
OT_16G02540.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
OT_18G01270.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Sro975_g226790.1 Contig3918.g30025 B binding protein CP29 0.02 OrthoFinder
Sro98_g050410.1 Contig3362.g26333 Chloroplastic 0.02 OrthoFinder
Transcript_contig_79793 79793 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
UNPLg00080.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Vocar.0001s0479.1 32885541 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0001s1775.1 32885648 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Vocar.0002s0071.1 32890569 Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Vocar.0002s0281.1 32890560 Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
Vocar.0002s0333.1 32890723 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0005s0361.1 32883819 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0007s0216.1 32888272 Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Vocar.0009s0370.1 32893259 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0012s0172.1 32895002 Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Vocar.0014s0016.1 32888452 Chlorophyll A-B binding protein [Interproscan]. 0.07 OrthoFinder
Vocar.0018s0037.1 32898532 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0021s0124.1 32896004 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0023s0180.1 32883354 Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Vocar.0028s0157.1 32895586 Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
XM_003054893.1 MicpuC2_45156, 45156 Prasinophyte specific chlorophyll a/b-binding protein,... 0.04 OrthoFinder
XM_003055426.1 MicpuC2_46212, 46212 Prasinophyte specific chlorophyll a/b-binding protein (LHCP2.7) 0.04 OrthoFinder
XM_003057773.1 MicpuC2_45464, 45464 Prasinophyte specific chlorophyll a/b-binding protein,... 0.05 OrthoFinder
XM_003057791.1 MicpuC2_57460, 57460 Prasinophyte specific chlorophyll a/b-binding protein,... 0.04 OrthoFinder
XM_003058148.1 MicpuC2_70880, 70880 Prasinophyte specific chlorophyll a/b-binding protein,... 0.07 OrthoFinder
XM_003059347.1 MicpuC2_49615, 49615 Prasinophyte specific chlorophyll a/b-binding protein,... 0.03 OrthoFinder
XM_003059477.1 MicpuC2_49623, 49623 Chlorophyll a/b-binding protein, psi-associated,... 0.06 OrthoFinder
XM_003060148.1 MicpuC2_70906, 70906 Chlorophyll a/b-binding protein (LHCQ) 0.03 OrthoFinder
XM_003061061.1 MicpuC2_70879, 70879 Prasinophyte specific chlorophyll a/b-binding protein,... 0.05 OrthoFinder
lcl|BLLF01000146.1_cds_GFH08210.1_2687 HaLaN_03140, GFH08210 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01000518.1_cds_GFH12589.1_7066 HaLaN_08302, GFH12589 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01000534.1_cds_GFH12729.1_7206 HaLaN_08471, GFH12729 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01000626.1_cds_GFH13553.1_8030 HaLaN_09459, GFH13553 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01000682.1_cds_GFH14061.1_8538 HaLaN_10037, GFH14061 Chlorophyll a-b binding protein, chloroplastic 0.05 OrthoFinder
lcl|BLLF01000742.1_cds_GFH14568.1_9045 HaLaN_10649, GFH14568 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01000768.1_cds_GFH14802.1_9279 HaLaN_10920, GFH14802 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01000956.1_cds_GFH16169.1_10646 HaLaN_12540, GFH16169 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01001042.1_cds_GFH16728.1_11205 HaLaN_13210, GFH16728 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01001360.1_cds_GFH18804.1_13281 HaLaN_15665, GFH18804 Chlorophyll a-b binding protein, chloroplastic 0.04 OrthoFinder
lcl|BLLF01001656.1_cds_GFH20549.1_15026 HaLaN_17690, GFH20549 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61161.1_400 PRW61161 Chlorophyll a b binding CP29 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61250.1_625 PRW61250 Light-harvesting of photosystem I 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61582.1_286 PRW61582 Cytochrome b-c1 complex subunit Rieske-mitochondrial 0.05 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60030.1_6172 PRW60030 Chlorophyll a-b binding of LHCII type chloroplastic 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59323.1_7029 PRW59323 Light-harvesting of photosystem I 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW56910.1_9115 PRW56910 Light-harvesting of photosystem I 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57230.1_9116 PRW57230 Light-harvesting of photosystem I 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57333.1_9090 PRW57333 Chlorophyll a b-binding apo CP26 precursor 0.05 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56009.1_10248 PRW56009 Light-harvesting of photosystem I 0.04 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56118.1_10249 PRW56118 Light harvesting complex a 0.03 OrthoFinder
lcl|LHPG02000010.1_cds_PRW50945.1_980 PRW50945 Chlorophyll a b-binding 0.02 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45536.1_1258 PRW45536 Light-harvesting of photosystem I 0.04 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45697.1_1257 PRW45697 Light-harvesting of photosystem I 0.04 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20612.1_5288 PRW20612 Chlorophyll a b-binding 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0006814 sodium ion transport IEP Enrichment
BP GO:0006885 regulation of pH IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
BP GO:0016126 sterol biosynthetic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0055067 monovalent inorganic cation homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 58 255
No external refs found!