1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002506186.1

XM_002506186.1 (MICPUN_95914, 95914)


Aliases : MICPUN_95914, 95914

Description : Replication factor C, C-terminal; ATPase, AAA-type, core [Interproscan].


Gene families : OG_01_0003725 (OrthoFinder) Phylogenetic Tree(s): OG0003725_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002506186.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Cre06.g251800 30778780, RFC4 Cell cycle.interphase.DNA... 0.1 OrthoFinder
Cz16g15180.t1 No alias ATPase, AAA-type, core [Interproscan]. 0.05 OrthoFinder
Dusal.0543s00001.1 33190906 ATPase, AAA-type, core; Replication factor C, C-terminal... 0.03 OrthoFinder
EOD29044 No alias ATPase, AAA-type, core [Interproscan]. 0.08 OrthoFinder
PTI_01G03910.1 No alias Replication factor C, C-terminal; DNA polymerase III,... 0.02 OrthoFinder
Sro262_g102000.1 Contig809.g9020 Factor C small subunit 0.04 OrthoFinder
Vocar.0015s0333.1 32899219 ATPase, AAA-type, core; Replication factor C, C-terminal... 0.03 OrthoFinder
XM_003056620.1 MicpuC2_14557, 14557 Replication factor C, C-terminal; ATPase, AAA-type, core... 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56135.1_9950 PRW56135 Replication factor C subunit 2 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495798.1_1796 KAA8495798 Replication factor C subunit 2 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007096 regulation of exit from mitosis IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
CC GO:0071821 FANCM-MHF complex IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
InterPro domains Description Start Stop
IPR013748 Rep_factorC_C 237 321
IPR003959 ATPase_AAA_core 42 167
No external refs found!