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  5. XM_002506163.1

XM_002506163.1 (MICPUN_88392, 88392)


Aliases : MICPUN_88392, 88392

Description : ATP-dependent RNA helicase Ski2, C-terminal; rRNA-processing arch domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002506163.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001155.2 tig00001155_g7310.t1 DExH-box ATP-dependent RNA helicase DExH11... 0.02 OrthoFinder
Cpa|evm.model.tig00020723.108 tig00020723_g13518.t1 RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder
Cre02.g117900 30785394 RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder
Cre06.g289950 30779809 RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder
Cre11.g482483 30775678 RNA processing.RNA decay.exosome complex.associated... 0.01 OrthoFinder
Cz08g28230.t1 No alias rRNA-processing arch domain; Helicase, C-terminal;... 0.07 OrthoFinder
Dusal.0632s00002.1 33192374 ATP-dependent RNA helicase Ski2, C-terminal;... 0.02 OrthoFinder
Dusal.0632s00003.1 33192367 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.03 OrthoFinder
EOD31566 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.02 OrthoFinder
OT_06G03030.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.05 OrthoFinder
OT_09G02900.1 No alias ATP-dependent RNA helicase Ski2, C-terminal;... 0.03 OrthoFinder
PTI_28G01510.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.04 OrthoFinder
Sro345_g122480.1 Contig2266.g18807 Viralicidic activity 2-like 2 0.04 OrthoFinder
Transcript_contig_78793 78793 ATP-dependent RNA helicase Ski2, C-terminal;... 0.02 OrthoFinder
Vocar.0001s0944.1 32886100 DEAD/DEAH box helicase domain; ATP-dependent RNA... 0.02 OrthoFinder
Vocar.0009s0027.1 32893340 rRNA-processing arch domain; ATP-dependent RNA helicase... 0.02 OrthoFinder
XM_002500240.1 MICPUN_78446, 78446 Helicase, C-terminal; ATP-dependent RNA helicase Ski2,... 0.03 OrthoFinder
XM_003061861.1 MicpuC2_44758, 44758 rRNA-processing arch domain; Helicase, C-terminal;... 0.05 OrthoFinder
lcl|BLLF01003501.1_cds_GFH27512.1_21989 HaLaN_25843, GFH27512 Hypothetical protein 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61094.1_711 PRW61094 Superkiller viralicidic activity 2-like 2 isoform B 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61095.1_712 PRW61095 Superkiller viralicidic activity 2-like 2 isoform A 0.04 OrthoFinder
lcl|LHPG02000027.1_cds_PRW05917.1_5938 PRW05917 Superkiller viralicidic activity 2-like 2 isoform B 0.06 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491098.1_9855 KAA8491098 Superkiller viralicidic activity 2-like 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 86 231
IPR025696 rRNA_proc-arch_dom 564 830
IPR012961 Ski2_C 858 1041
No external refs found!