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  5. XM_002506056.1

XM_002506056.1 (MICPUN_88065, 88065)


Aliases : MICPUN_88065, 88065

Description : Ribulose bisphosphate carboxylase/oxygenase activase (RCA)


Gene families : OG_01_0000770 (OrthoFinder) Phylogenetic Tree(s): OG0000770_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002506056.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020848.90 tig00020848_g14621.t1 Ribulose bisphosphate carboxylase/oxygenase activase,... 0.04 OrthoFinder
Cpa|evm.model.tig00020848.91 tig00020848_g14621.t1 Ribulose bisphosphate carboxylase/oxygenase activase,... 0.04 OrthoFinder
Cre04.g229300 30791545, RCA1 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.04 OrthoFinder
Cz13g02230.t1 No alias ATPase, AAA-type, core [Interproscan]. 0.03 OrthoFinder
OT_04G02530.1 No alias ATPase, AAA-type, core [Interproscan]. 0.06 OrthoFinder
OT_12G03170.1 No alias ATPase, AAA-type, core; Rhodanese-like domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_90064 90064 Hypothetical protein 0.01 OrthoFinder
Vocar.0001s1749.1 32884852 ATPase, AAA-type, core [Interproscan]. 0.08 OrthoFinder
XM_003057947.1 MicpuC2_32785, 32785 Ribulose bisphosphate carboxylase/oxygenase activase,... 0.05 OrthoFinder
XM_003060029.1 MicpuC2_18586, 18586 ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
XM_003060115.1 MicpuC2_18274, 18274 ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
XM_003064250.1 MicpuC2_23296, 23296 ATPase, AAA-type, core [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000080.1_cds_GFH07200.1_1677 HaLaN_01968, GFH07200 ATPase_AAA_core domain-containing protein 0.03 OrthoFinder
lcl|BLLF01000147.1_cds_GFH08236.1_2713 HaLaN_03167, GFH08236 Rubisco activase 0.02 OrthoFinder
lcl|BLLF01000761.1_cds_GFH14743.1_9220 HaLaN_10853, GFH14743 ATPase_AAA_core domain-containing protein 0.02 OrthoFinder
lcl|BLLF01001289.1_cds_GFH18353.1_12830 HaLaN_15147, GFH18353 ATPase_AAA_core domain-containing protein 0.01 OrthoFinder
lcl|BLLF01002607.1_cds_GFH24695.1_19172 HaLaN_22539, GFH24695 ATPase_AAA_core domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60797.1_4613 PRW60797 Rubisco activase 0.05 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59108.1_7247 PRW59108 Rubisco activase 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 124 267
No external refs found!