1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002505750.1

XM_002505750.1 (MICPUN_63712, 63712)


Aliases : MICPUN_63712, 63712

Description : Pre-mRNA-splicing factor SLU7 domain [Interproscan].


Gene families : OG_01_0003323 (OrthoFinder) Phylogenetic Tree(s): OG0003323_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002505750.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Cre03.g194000 30787426 Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica 0.03 OrthoFinder
Cz01g38130.t1 No alias Pre-mRNA-splicing factor SLU7 domain [Interproscan]. 0.05 OrthoFinder
EOD41716 No alias Pre-mRNA-splicing factor SLU7 domain [Interproscan]. 0.03 OrthoFinder
PTI_11G03440.1 No alias Pre-mRNA-splicing factor SLU7 domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_54973 54973 Pre-mRNA-splicing factor SLU7 domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000649.1_cds_GFH13758.1_8235 HaLaN_09703, GFH13758 Slu7 domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33892.1_3106 PRW33892 Pre-mRNA-splicing factor SLU7 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496966.1_695 KAA8496966 Pre-mRNA-splicing factor SLU7 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR021715 Slu7_dom 134 410
No external refs found!