1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002505709.1

XM_002505709.1 (MICPUN_63623, 63623)


Aliases : MICPUN_63623, 63623

Description : HELP; WD40 repeat; Anaphase-promoting complex subunit 4, WD40 domain [Interproscan].


Gene families : OG_01_0000109 (OrthoFinder) Phylogenetic Tree(s): OG0000109_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002505709.1
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.33 tig00000042_g15425.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00000042.34 tig00000042_g15425.t1 Calpain-type cysteine protease DEK1 OS=Zea mays 0.03 OrthoFinder
Cre01.g010880 30789173 Cilia- and flagella-associated protein 44... 0.02 OrthoFinder
EOD39577 No alias HELP [Interproscan]. 0.04 OrthoFinder
Vocar.0029s0133.1 32887586 WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_003056890.1 MicpuC2_56546, 56546 PLAT/LH2 domain; HELP [Interproscan]. 0.03 OrthoFinder
XM_003058024.1 MicpuC2_57171, 57171 PLAT/LH2 domain; Pleckstrin homology domain [Interproscan]. 0.04 OrthoFinder
XM_003059760.1 MicpuC2_18351, 18351 HELP; WD40 repeat [Interproscan]. 0.05 OrthoFinder
XM_003061776.1 MicpuC2_48318, 48318 HELP [Interproscan]. 0.02 OrthoFinder
XM_003062633.1 MicpuC2_4590, 4590 WD40 repeat [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 515 589
IPR001680 WD40_repeat 1580 1613
IPR001680 WD40_repeat 1078 1101
IPR001680 WD40_repeat 1459 1495
IPR001680 WD40_repeat 464 495
IPR001680 WD40_repeat 737 769
IPR001680 WD40_repeat 1301 1334
IPR001680 WD40_repeat 1210 1247
IPR005108 HELP 74 141
IPR005108 HELP 946 1012
No external refs found!