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  5. XM_002505303.1

XM_002505303.1 (MICPUN_86677, 86677)


Aliases : MICPUN_86677, 86677

Description : AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core; Vps4 oligomerisation, C-terminal [Interproscan].


Gene families : OG_01_0000074 (OrthoFinder) Phylogenetic Tree(s): OG0000074_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002505303.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001229.23 tig00001229_g7858.t1 Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre01.g022000 30788870 ATPase family AAA domain-containing protein FIGL1... 0.04 OrthoFinder
Cz01g20220.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
Cz03g25090.t1 No alias ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
EOD34248 No alias Vps4 oligomerisation, C-terminal; AAA ATPase, AAA+ lid... 0.04 OrthoFinder
OT_15G01910.1 No alias AAA ATPase, AAA+ lid domain; Vps4 oligomerisation,... 0.05 OrthoFinder
OT_15G01930.1 No alias ATPase, AAA-type, core [Interproscan]. 0.06 OrthoFinder
Transcript_contig_54972 54972 MIT; ATPase, AAA-type, core; Vps4 oligomerisation,... 0.02 OrthoFinder
Transcript_contig_56032 56032 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
XM_003060221.1 MicpuC2_18879, 18879 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 216 253
IPR003959 ATPase_AAA_core 59 190
IPR015415 Vps4_C 273 305
No external refs found!