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  5. XM_002505110.1

XM_002505110.1 (MICPUN_102989, 102989)


Aliases : MICPUN_102989, 102989

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000905 (OrthoFinder) Phylogenetic Tree(s): OG0000905_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002505110.1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cre06.g275100 30778429 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.03 OrthoFinder
Cre10.g466450 30789814 No description available 0.03 OrthoFinder
Cz01g09300.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Cz08g29220.t1 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
Dusal.0054s00014.1 33201653 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Dusal.0556s00003.1 33195343 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
EOD18277 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
OT_05G05100.1 No alias RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
PTI_22G00530.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Sro402_g135470.1 Contig305.g4008 Stimulation factor subunit 2 tau variant 0.02 OrthoFinder
Sro656_g182510.1 Contig256.g3162 Splicing factor 3B subunit 4 0.02 OrthoFinder
SymbC1.scaffold3432.4 3432.4 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Vocar.0029s0122.1 32887292 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_003060411.1 MicpuC2_60299, 60299 RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01004145.1_cds_GFH29022.1_23499 HaLaN_27610, GFH29022 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59230.1_7321 PRW59230 Nucleolin 1-like isoform X2 0.05 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58178.1_8002 PRW58178 RNA-binding domain-containing 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 135 206
IPR000504 RRM_dom 28 96
No external refs found!