1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002504862.1

XM_002504862.1 (MICPUN_86547, 86547)


Aliases : MICPUN_86547, 86547

Description : NURF complex component


Gene families : OG_01_0003117 (OrthoFinder) Phylogenetic Tree(s): OG0003117_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002504862.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Cre12.g523200 30792941 Chromatin organisation.histone modifications.histone... 0.08 OrthoFinder
Cz05g15140.t1 No alias WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.04 OrthoFinder
OT_12G00120.1 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat;... 0.07 OrthoFinder
Sro1_g000700.1 Contig3007.g23985 Probable histone-binding protein lin-53 0.07 OrthoFinder
Transcript_contig_54786 54786 Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.01 OrthoFinder
Vocar.0006s0459.1 32894188 WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.03 OrthoFinder
XM_003060655.1 MicpuC2_49651, 49651 NURF complex component 0.13 OrthoFinder
lcl|BLLF01001650.1_cds_GFH20512.1_14989 HaLaN_17649, GFH20512 WD-40 repeat-containing protein MSI1 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW56977.1_9114 PRW56977 WD-40 repeat-containing MSI1 0.04 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492986.1_2722 KAA8492986 Histone-binding protein RBBP4 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006177 GMP biosynthetic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006333 chromatin assembly or disassembly IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0031503 protein-containing complex localization IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0033566 gamma-tubulin complex localization IEP Enrichment
BP GO:0034629 cellular protein-containing complex localization IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0046037 GMP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
CC GO:0071821 FANCM-MHF complex IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 19 88
IPR001680 WD40_repeat 266 303
IPR001680 WD40_repeat 368 403
IPR001680 WD40_repeat 223 257
IPR001680 WD40_repeat 310 347
No external refs found!