Aliases : MICPUN_62221, 62221
Description : SNF2 super family
Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: XM_002504726.1 | |
Cluster | HCCA: Cluster_41 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000217.25 | tig00000217_g19158.t1 | Chromatin structure-remodeling complex protein SYD... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00021623.13 | tig00021623_g23013.t1 | RNA biosynthesis.transcriptional activation.PHD finger... | 0.03 | OrthoFinder | |
Cre07.g325700 | 30774388 | ATP-dependent helicase BRM OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
Cre12.g508150 | 30793288 | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder | |
Cz01g25030.t1 | No alias | Helicase, C-terminal; Chromo domain; Domain of unknown... | 0.03 | OrthoFinder | |
Cz19g07040.t1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.03 | OrthoFinder | |
Dusal.0357s00004.1 | 33189829 | SNF2-related, N-terminal domain; Helicase, C-terminal;... | 0.02 | OrthoFinder | |
EOD18155 | No alias | High mobility group box domain; ISWI, HAND domain;... | 0.06 | OrthoFinder | |
EOD25651 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.03 | OrthoFinder | |
EOD33503 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
EOD36957 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.03 | OrthoFinder | |
OT_07G04020.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.03 | OrthoFinder | |
OT_12G02840.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.03 | OrthoFinder | |
PTI_02G06230.1 | No alias | Bromodomain; Helicase, C-terminal; Snf2, ATP coupling... | 0.02 | OrthoFinder | |
PTI_04G04910.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
Sro272_g104840.1 | Contig2144.g18025 | Chromodomain-helicase-DNA-binding protein | 0.02 | OrthoFinder | |
Vocar.0016s0256.1 | 32897896 | SLIDE domain; ISWI, HAND domain; Helicase, C-terminal;... | 0.02 | OrthoFinder | |
XM_003058971.1 | MicpuC2_58412, 58412 | SNF2 super family | 0.02 | OrthoFinder | |
lcl|BLLF01000001.1_cds_GFH05550.1_27 | HaLaN_00030, GFH05550 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
lcl|BLLF01003474.1_cds_GFH27437.1_21914 | HaLaN_25757, GFH27437 | SNF2-related, N-terminal domain [Interproscan]. | 0.03 | OrthoFinder | |
lcl|LHPG02000002.1_cds_PRW60614.1_4411 | PRW60614 | ATP-dependent helicase BRM | 0.02 | OrthoFinder | |
lcl|LHPG02000005.1_cds_PRW58677.1_7830 | PRW58677 | Chromatin structure-remodeling complex SYD-like isoform X1 | 0.03 | OrthoFinder | |
lcl|LHPG02000008.1_cds_PRW56740.1_9705 | PRW56740 | Chromatin-remodeling complex ATPase chain | 0.04 | OrthoFinder | |
lcl|VRMN01000001.1_cds_KAA8498955.1_7908 | KAA8498955 | SWI/SNF chromatin-remodeling complex subunit snf22 | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | Enrichment |
MF | GO:0000287 | magnesium ion binding | IEP | Enrichment |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003824 | catalytic activity | IEP | Enrichment |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
MF | GO:0004832 | valine-tRNA ligase activity | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0008152 | metabolic process | IEP | Enrichment |
BP | GO:0008380 | RNA splicing | IEP | Enrichment |
MF | GO:0008452 | RNA ligase activity | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
MF | GO:0016782 | transferase activity, transferring sulphur-containing groups | IEP | Enrichment |
MF | GO:0016874 | ligase activity | IEP | Enrichment |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Enrichment |
MF | GO:0017069 | snRNA binding | IEP | Enrichment |
MF | GO:0017070 | U6 snRNA binding | IEP | Enrichment |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
MF | GO:0030623 | U5 snRNA binding | IEP | Enrichment |
MF | GO:0030976 | thiamine pyrophosphate binding | IEP | Enrichment |
MF | GO:0031072 | heat shock protein binding | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
MF | GO:0035596 | methylthiotransferase activity | IEP | Enrichment |
BP | GO:0043038 | amino acid activation | IEP | Enrichment |
BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
MF | GO:0050497 | alkylthioltransferase activity | IEP | Enrichment |
MF | GO:0051082 | unfolded protein binding | IEP | Enrichment |
MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Enrichment |
BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
MF | GO:0071949 | FAD binding | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
MF | GO:1901681 | sulfur compound binding | IEP | Enrichment |
No external refs found! |