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  5. XM_002504492.1

XM_002504492.1 (MICPUN_104934, 104934)


Aliases : MICPUN_104934, 104934

Description : SNF2 super family


Gene families : OG_01_0002304 (OrthoFinder) Phylogenetic Tree(s): OG0002304_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002504492.1
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.26 tig00000194_g14752.t1 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1... 0.02 OrthoFinder
Cpa|evm.model.tig00021501.9 tig00021501_g21949.t1 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
Cre14.g618860 30776654 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
PTI_08G02450.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
Sro757_g197940.1 Contig322.g4283 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 0.04 OrthoFinder
TP11G01810.1 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61597.1_385 PRW61597 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 isoform A 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61598.1_386 PRW61598 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 isoform B 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 654 927
IPR001650 Helicase_C 1197 1309
IPR014012 HSA_dom 181 238
No external refs found!