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Aliases : MICPUN_60237, 60237
Description : Radical SAM [Interproscan].
Gene families : OG_01_0000198 (OrthoFinder) Phylogenetic Tree(s): OG0000198_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: XM_002503982.1 | |
| Cluster | HCCA: Cluster_56 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre01.g028450 | 30788447 | No description available | 0.02 | OrthoFinder | |
| Cre01.g043000 | 30789590 | No description available | 0.03 | OrthoFinder | |
| Cz10g12170.t1 | No alias | Hypothetical protein | 0.02 | OrthoFinder | |
| OT_01G01400.1 | No alias | Radical SAM [Interproscan]. | 0.05 | OrthoFinder | |
| OT_12G02200.1 | No alias | 4Fe-4S single cluster domain; Radical SAM [Interproscan]. | 0.07 | OrthoFinder | |
| Transcript_contig_1906 | 1906 | Hypothetical protein | 0.02 | OrthoFinder | |
| XM_003054875.1 | MicpuC2_10773, 10773 | Hypothetical protein | 0.06 | OrthoFinder | |
| lcl|LHPG02000017.1_cds_PRW33242.1_3456 | PRW33242 | Ribosomal RNA large subunit methyltransferase N isoform A | 0.03 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8496335.1_64 | KAA8496335 | Dual-specificity RNA methyltransferase RlmN | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEA | Interproscan |
| MF | GO:0051536 | iron-sulfur cluster binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001510 | RNA methylation | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004743 | pyruvate kinase activity | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006400 | tRNA modification | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0008033 | tRNA processing | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Enrichment |
| BP | GO:0009451 | RNA modification | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
| MF | GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | IEP | Enrichment |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0019842 | vitamin binding | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| BP | GO:0030488 | tRNA methylation | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| MF | GO:0030955 | potassium ion binding | IEP | Enrichment |
| MF | GO:0031406 | carboxylic acid binding | IEP | Enrichment |
| MF | GO:0031418 | L-ascorbic acid binding | IEP | Enrichment |
| MF | GO:0031420 | alkali metal ion binding | IEP | Enrichment |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| CC | GO:0034708 | methyltransferase complex | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| MF | GO:0043177 | organic acid binding | IEP | Enrichment |
| BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| MF | GO:0048029 | monosaccharide binding | IEP | Enrichment |
| MF | GO:0051213 | dioxygenase activity | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
| MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007197 | rSAM | 126 | 301 |
| No external refs found! |