Aliases : MICPUN_82497, 82497
Description : TRNA-dihydrouridine synthase
Gene families : OG_01_0001153 (OrthoFinder) Phylogenetic Tree(s): OG0001153_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: XM_002503300.1 | |
Cluster | HCCA: Cluster_7 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00001086.5 | tig00001086_g6839.t1 | RNA processing.RNA modification.dihydrouridylation.tRNA... | 0.02 | OrthoFinder | |
Cpa|evm.model.tig00001110.8 | tig00001110_g7085.t1 | RNA processing.RNA modification.dihydrouridylation.tRNA... | 0.02 | OrthoFinder | |
Cre12.g486900 | 30792022 | RNA processing.RNA modification.dihydrouridylation.tRNA... | 0.03 | OrthoFinder | |
Cz10g20190.t1 | No alias | tRNA-dihydrouridine synthase [Interproscan]. | 0.02 | OrthoFinder | |
OT_08G01020.1 | No alias | tRNA-dihydrouridine synthase [Interproscan]. | 0.17 | OrthoFinder | |
Sro1286_g259400.1 | Contig2537.g20699 | Synthase | 0.03 | OrthoFinder | |
TP06G06600.1 | No alias | tRNA-dihydrouridine synthase [Interproscan]. | 0.05 | OrthoFinder | |
Transcript_contig_57826 | 57826 | tRNA-dihydrouridine synthase [Interproscan]. | 0.01 | OrthoFinder | |
lcl|BLLF01002621.1_cds_GFH24741.1_19218 | HaLaN_22594, GFH24741 | TRNA-dihydrouridine synthase | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0008033 | tRNA processing | IEA | Interproscan |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEA | Interproscan |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEA | Interproscan |
BP | GO:0055114 | obsolete oxidation-reduction process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0004386 | helicase activity | IEP | Enrichment |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
MF | GO:0005524 | ATP binding | IEP | Enrichment |
MF | GO:0005525 | GTP binding | IEP | Enrichment |
CC | GO:0005634 | nucleus | IEP | Enrichment |
CC | GO:0005730 | nucleolus | IEP | Enrichment |
BP | GO:0006364 | rRNA processing | IEP | Enrichment |
MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
MF | GO:0008134 | transcription factor binding | IEP | Enrichment |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Enrichment |
BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
MF | GO:0016782 | transferase activity, transferring sulphur-containing groups | IEP | Enrichment |
MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
CC | GO:0030684 | preribosome | IEP | Enrichment |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Enrichment |
CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
MF | GO:0035596 | methylthiotransferase activity | IEP | Enrichment |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
CC | GO:0043226 | organelle | IEP | Enrichment |
CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
MF | GO:0050497 | alkylthioltransferase activity | IEP | Enrichment |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | Enrichment |
MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Enrichment |
MF | GO:0051540 | metal cluster binding | IEP | Enrichment |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001269 | DUS_fam | 39 | 337 |
No external refs found! |