XM_002503300.1 (MICPUN_82497, 82497)


Aliases : MICPUN_82497, 82497

Description : TRNA-dihydrouridine synthase


Gene families : OG_01_0001153 (OrthoFinder) Phylogenetic Tree(s): OG0001153_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002503300.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001086.5 tig00001086_g6839.t1 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.02 OrthoFinder
Cpa|evm.model.tig00001110.8 tig00001110_g7085.t1 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.02 OrthoFinder
Cre12.g486900 30792022 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.03 OrthoFinder
Cz10g20190.t1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
OT_08G01020.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.17 OrthoFinder
Sro1286_g259400.1 Contig2537.g20699 Synthase 0.03 OrthoFinder
TP06G06600.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.05 OrthoFinder
Transcript_contig_57826 57826 tRNA-dihydrouridine synthase [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01002621.1_cds_GFH24741.1_19218 HaLaN_22594, GFH24741 TRNA-dihydrouridine synthase 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0017150 tRNA dihydrouridine synthase activity IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001269 DUS_fam 39 337
No external refs found!