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  5. XM_002503039.1

XM_002503039.1 (MICPUN_59033, 59033)


Aliases : MICPUN_59033, 59033

Description : Ribosomal protein L4/L1e [Interproscan].


Gene families : OG_01_0001152 (OrthoFinder) Phylogenetic Tree(s): OG0001152_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002503039.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.35 tig00001003_g6290.t1 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum 0.04 OrthoFinder
Cre11.g479500 30775927, PRPL4 Protein biosynthesis.organelle translation... 0.26 OrthoFinder
Cre12.g520400 30792302, MRPL4 No description available 0.04 OrthoFinder
Cz03g02040.t1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.18 OrthoFinder
Dusal.0131s00022.1 33186833 Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
Dusal.0246s00007.1 33197700 Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
EOD32718 No alias Ribosomal protein L4/L1e [Interproscan]. 0.04 OrthoFinder
OT_11G01720.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.03 OrthoFinder
OT_16G00330.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.25 OrthoFinder
Sro279_g106690.1 Contig3140.g24908 Protein L4 0.09 OrthoFinder
Sro51_chlor_g029480.1 Rpl4 Rpl4 0.09 OrthoFinder
TPCG02350.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.1 OrthoFinder
Transcript_contig_54114 54114 Ribosomal protein L4/L1e [Interproscan]. 0.04 OrthoFinder
Vocar.0048s0048.1 32893676 Ribosomal protein L4/L1e [Interproscan]. 0.07 OrthoFinder
XM_003061053.1 MicpuC2_48008, 48008 Ribosomal protein L4/L1e [Interproscan]. 0.1 OrthoFinder
lcl|BLLF01001390.1_cds_GFH19003.1_13480 HaLaN_15888, GFH19003 Ribosomal protein L4/L1e [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45732.1_1468 PRW45732 50S ribosomal L4 0.13 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006536 glutamate metabolic process IEP Enrichment
BP GO:0006537 glutamate biosynthetic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Enrichment
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0015930 glutamate synthase activity IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0034311 diol metabolic process IEP Enrichment
BP GO:0034312 diol biosynthetic process IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 79 265
No external refs found!