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  5. XM_002502940.1

XM_002502940.1 (MICPUN_66278, 66278)


Aliases : MICPUN_66278, 66278

Description : tRNA-dihydrouridine synthase [Interproscan].


Gene families : OG_01_0001054 (OrthoFinder) Phylogenetic Tree(s): OG0001054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002502940.1

Target Alias Description ECC score Gene Family Method Actions
Cre04.g229948 30791118 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.09 OrthoFinder
Cz12g22180.t1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
Dusal.0020s00014.1 33193712 tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
Dusal.0362s00014.1 33189274 tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
EOD04070 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.04 OrthoFinder
EOD38961 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
OT_10G01720.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.09 OrthoFinder
Vocar.0001s1778.1 32885246 E3 ligase, CCCH-type zinc finger; tRNA-dihydrouridine... 0.02 OrthoFinder
lcl|BLLF01002284.1_cds_GFH23483.1_17960 HaLaN_21100, GFH23483 TRNA-dihydrouridine synthase 3 0.02 OrthoFinder
lcl|BLLF01005284.1_cds_GFH31005.1_25482 HaLaN_29949, GFH31005 TRNA-dihydrouridine synthase 3 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61399.1_401 PRW61399 TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0017150 tRNA dihydrouridine synthase activity IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001269 DUS_fam 1 216
No external refs found!