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  5. Cpa|evm.model.tig00022080.18

Cpa|evm.model.tig00022080.18 (tig00022080_g23802.t1)


Aliases : tig00022080_g23802.t1

Description : Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana


Gene families : OG_01_0002867 (OrthoFinder) Phylogenetic Tree(s): OG0002867_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00022080.18
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
Cre17.g729250 30782291, UPF2 RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder
Cz05g14090.t1 No alias Up-frameshift suppressor 2, C-terminal; MIF4G-like, type... 0.03 OrthoFinder
PTI_27G00580.1 No alias Up-frameshift suppressor 2, C-terminal; MIF4G-like, type... 0.03 OrthoFinder
Sro1269_g257860.1 Contig3033.g24207 Regulator of nonsense transcripts 0.04 OrthoFinder
Transcript_contig_56563 56563 MIF4G-like, type 3 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57003.1_9102 PRW57003 Regulator of nonsense transcripts UPF2 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!