XM_002502479.1 (MICPUN_90780, 90780)

Aliases : MICPUN_90780, 90780

Description : Ribosomal protein L13e [Interproscan].

Gene families : OG_01_0002835 (OrthoFinder) Phylogenetic Tree(s): OG0002835_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_002502479.1
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020629.36	tig00020629_g12358.t1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.32	OrthoFinder
Cre14.g630100	30776357, RPL13	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder
Cz15g22130.t1	No alias	Ribosomal protein L13e; Tetratricopeptide repeat [Interproscan].	0.22	OrthoFinder
Dusal.0041s00032.1	33194551	Ribosomal protein L13e [Interproscan].	0.1	OrthoFinder
EOD29349	No alias	60S ribosomal protein L13 [Ensembl].	0.17	OrthoFinder
OT_05G05020.1	No alias	Ribosomal protein L13e [Interproscan].	0.29	OrthoFinder
PTI_20G02450.1	No alias	Ribosomal protein L13e [Interproscan].	0.33	OrthoFinder
Sro307_g113390.1	Contig2839.g22809	60S ribosomal protein L13-1	0.36	OrthoFinder
SymbC1.scaffold5728.4	5728.4	Ribosomal protein L13e [Interproscan].	0.05	OrthoFinder
TP04G08470.1	No alias	Ribosomal protein L13e [Interproscan].	0.3	OrthoFinder
Vocar.0006s0140.1	32894315	Ribosomal protein L13e [Interproscan].	0.06	OrthoFinder
XM_003056868.1	MicpuC2_62462, 62462	Ribosomal protein L13e [Interproscan].	0.09	OrthoFinder
lcl\|BLLF01001412.1_cds_GFH19137.1_13614	HaLaN_16038, GFH19137	60S ribosomal protein L13	0.13	OrthoFinder
lcl\|BLLF01008736.1_cds_GFH33502.1_27979	HaLaN_32883, GFH33502	60S ribosomal protein L13	0.02	OrthoFinder
lcl\|LHPG02000001.1_cds_PRW61522.1_672	PRW61522	60S ribosomal L13-2	0.08	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491921.1_4929	KAA8491921	60S ribosomal protein L13-1	0.15	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003937	IMP cyclohydrolase activity	IEP	Enrichment
MF	GO:0004055	argininosuccinate synthase activity	IEP	Enrichment
MF	GO:0004602	glutathione peroxidase activity	IEP	Enrichment
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	Enrichment
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Enrichment
MF	GO:0004827	proline-tRNA ligase activity	IEP	Enrichment
BP	GO:0006082	organic acid metabolic process	IEP	Enrichment
BP	GO:0006417	regulation of translation	IEP	Enrichment
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006448	regulation of translational elongation	IEP	Enrichment
BP	GO:0006449	regulation of translational termination	IEP	Enrichment
BP	GO:0006457	protein folding	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006525	arginine metabolic process	IEP	Enrichment
BP	GO:0006526	arginine biosynthetic process	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Enrichment
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Enrichment
BP	GO:0009092	homoserine metabolic process	IEP	Enrichment
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Enrichment
BP	GO:0009893	positive regulation of metabolic process	IEP	Enrichment
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Enrichment
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Enrichment
BP	GO:0010628	positive regulation of gene expression	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Enrichment
MF	GO:0019238	cyclohydrolase activity	IEP	Enrichment
BP	GO:0019346	transsulfuration	IEP	Enrichment
BP	GO:0019752	carboxylic acid metabolic process	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Enrichment
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Enrichment
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Enrichment
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Enrichment
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Enrichment
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Enrichment
MF	GO:0043022	ribosome binding	IEP	Enrichment
BP	GO:0043038	amino acid activation	IEP	Enrichment
BP	GO:0043039	tRNA aminoacylation	IEP	Enrichment
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	Enrichment
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Enrichment
BP	GO:0043436	oxoacid metabolic process	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
BP	GO:0045727	positive regulation of translation	IEP	Enrichment
BP	GO:0045901	positive regulation of translational elongation	IEP	Enrichment
BP	GO:0045905	positive regulation of translational termination	IEP	Enrichment
BP	GO:0048518	positive regulation of biological process	IEP	Enrichment
BP	GO:0048522	positive regulation of cellular process	IEP	Enrichment
BP	GO:0050667	homocysteine metabolic process	IEP	Enrichment
BP	GO:0051130	positive regulation of cellular component organization	IEP	Enrichment
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Enrichment
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001380	Ribosomal_L13e	7	190

External Links

No external refs found!

XM_002502479.1 (MICPUN_90780, 90780)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation