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  5. Cpa|evm.model.tig00022075.50

Cpa|evm.model.tig00022075.50 (tig00022075_g23611.t1)


Aliases : tig00022075_g23611.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL40 component


Gene families : OG_01_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00022075.50
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre01.g007051 30788581 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder
Cre06.g273600 30779902, RPS27a Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder
Cz09g22150.t1 No alias Ribosomal protein S27a [Interproscan]. 0.16 OrthoFinder
Cz13g16210.t1 No alias Ubiquitin-like domain [Interproscan]. 0.05 OrthoFinder
Dusal.0222s00011.1 33201848 Ribosomal protein S27a; Ubiquitin-like domain [Interproscan]. 0.09 OrthoFinder
Dusal.0519s00002.1 33200370 Ubiquitin-like domain [Interproscan]. 0.03 OrthoFinder
Dusal.0808s00008.1 33188936 Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.03 OrthoFinder
EOD24536 No alias Ribosomal protein L41; Ubiquitin-like domain [Interproscan]. 0.06 OrthoFinder
EOD32212 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.1 OrthoFinder
EOD34096 No alias Ribosomal protein L41; Ubiquitin-like domain [Interproscan]. 0.06 OrthoFinder
OT_07G00910.1 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.09 OrthoFinder
OT_08G01740.1 No alias Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.12 OrthoFinder
PTI_07G02070.1 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.12 OrthoFinder
Sro305_g112730.1 Contig560.g7114 Polyubiquitin (Fragment) 0.22 OrthoFinder
Sro490_g153470.1 Contig328.g4367 Polyubiquitin (Fragment) 0.2 OrthoFinder
TP05G02210.1 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.19 OrthoFinder
Vocar.0002s0346.1 32890766 Ribosomal protein S27a; Ubiquitin-like domain [Interproscan]. 0.1 OrthoFinder
Vocar.0024s0156.1 32890529 Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.03 OrthoFinder
Vocar.0031s0093.1 32890066 Ubiquitin-like domain [Interproscan]. 0.03 OrthoFinder
XM_002501154.1 MICPUN_90428, 90428 Ribosomal protein S27a; Ubiquitin-like domain [Interproscan]. 0.17 OrthoFinder
XM_002503017.1 MICPUN_82590, 82590 Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.1 OrthoFinder
XM_003054911.1 MicpuC2_50207, 50207 Ubiquitin-like domain [Interproscan]. 0.01 OrthoFinder
XM_003058637.1 MicpuC2_17541, 17541 Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60289.1_4387 PRW60289 Ubiquitin-40S ribosomal S27a 0.13 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56465.1_9834 PRW56465 Ubiquitin-60S ribosomal L40 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497057.1_786 KAA8497057 Ubiquitin-like protein 1-40S ribosomal protein S27a 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493558.1_4320 KAA8493558 Ubiquitin-60S ribosomal protein L40-2 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 108 157
IPR000626 Ubiquitin-like_dom 32 104
No external refs found!