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  5. Cpa|evm.model.tig00022075.32

Cpa|evm.model.tig00022075.32 (tig00022075_g23594.t1)


Aliases : tig00022075_g23594.t1

Description : Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana


Gene families : OG_01_0002520 (OrthoFinder) Phylogenetic Tree(s): OG0002520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00022075.32
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Cre12.g513701 30791778 DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.03 OrthoFinder
Cz05g10330.t1 No alias Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.05 OrthoFinder
Dusal.0175s00005.1 33199720 DBP10, C-terminal; Helicase, C-terminal; DEAD/DEAH box... 0.02 OrthoFinder
EOD14476 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.03 OrthoFinder
OT_06G03920.1 No alias Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.04 OrthoFinder
PTI_06G03220.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
Sro1505_g278170.1 Contig474.g6439 Dependent RNA helicase 0.05 OrthoFinder
XM_002499996.1 MICPUN_78680, 78680 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
XM_003057837.1 MicpuC2_16058, 16058 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
lcl|BLLF01002986.1_cds_GFH26001.1_20478 HaLaN_24070, GFH26001 DEAD-box ATP-dependent RNA helicase 29 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33126.1_3489 PRW33126 DEAD-box ATP-dependent RNA helicase 29 isoform X1 isoform A 0.08 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492805.1_2541 KAA8492805 ATP-dependent RNA helicase DDX54 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003724 RNA helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 108 267
IPR001650 Helicase_C 303 414
IPR012541 DBP10_C 619 686
No external refs found!