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  5. XM_002501609.1

XM_002501609.1 (MICPUN_57640, 57640)


Aliases : MICPUN_57640, 57640

Description : Pentatricopeptide repeat [Interproscan].


Gene families : OG_01_0001872 (OrthoFinder) Phylogenetic Tree(s): OG0001872_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002501609.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
XM_003057423.1 MicpuC2_56665, 56665 Hypothetical protein 0.04 OrthoFinder
XM_003062541.1 MicpuC2_42163, 42163 Pentatricopeptide repeat [Interproscan]. 0.02 OrthoFinder
XM_003062946.1 MicpuC2_52541, 52541 Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0009236 cobalamin biosynthetic process IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
CC GO:0016592 mediator complex IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 559 614
No external refs found!