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  5. XM_002501391.1

XM_002501391.1 (MICPUN_97280, 97280)


Aliases : MICPUN_97280, 97280

Description : Ribosomal protein L13 [Interproscan].


Gene families : OG_01_0000958 (OrthoFinder) Phylogenetic Tree(s): OG0000958_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002501391.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020912.24 tig00020912_g15798.t1 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre06.g264350 30779581, PRPL13 Protein biosynthesis.organelle translation... 0.23 OrthoFinder
Cre09.g405200 30781496, MRPL13 Protein biosynthesis.organelle translation... 0.05 OrthoFinder
Cz11g15150.t1 No alias Ribosomal protein L13 [Interproscan]. 0.18 OrthoFinder
Dusal.0422s00009.1 33186843 Ribosomal protein L13 [Interproscan]. 0.02 OrthoFinder
OT_03G01410.1 No alias Ribosomal protein L13 [Interproscan]. 0.02 OrthoFinder
OT_06G01030.1 No alias Ribosomal protein L13 [Interproscan]. 0.22 OrthoFinder
Sro874_g214140.1 Contig589.g7365 Protein L13 0.06 OrthoFinder
SymbC1.scaffold4.714 4.714 Ribosomal protein S9; Ubiquitinol-cytochrome C... 0.01 OrthoFinder
TPCG02710.1 No alias Ribosomal protein L13 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_3807 3807 Ribosomal protein L13 [Interproscan]. 0.02 OrthoFinder
Transcript_contig_89766 89766 Ribosomal protein L13 [Interproscan]. 0.03 OrthoFinder
Vocar.0002s0545.1 32890832 Ribosomal protein L13 [Interproscan]. 0.07 OrthoFinder
Vocar.0062s0012.1 32892907 Ribosomal protein L13 [Interproscan]. 0.02 OrthoFinder
XM_003059440.1 MicpuC2_27251, 27251 Ribosomal protein L13 [Interproscan]. 0.12 OrthoFinder
XM_003062638.1 MicpuC2_7563, 7563 Ribosomal protein L13 [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20835.1_5043 PRW20835 50S ribosomal chloroplastic 0.13 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0004619 phosphoglycerate mutase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
BP GO:0006007 glucose catabolic process IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0006536 glutamate metabolic process IEP Enrichment
BP GO:0006537 glutamate biosynthetic process IEP Enrichment
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Enrichment
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0015930 glutamate synthase activity IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0019320 hexose catabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0034311 diol metabolic process IEP Enrichment
BP GO:0034312 diol biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0046365 monosaccharide catabolic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 35 158
No external refs found!