1. Home
  2. Species
  3. Micromonas commoda
  4. Sequence
  5. XM_002501349.1

XM_002501349.1 (MICPUN_80937, 80937)


Aliases : MICPUN_80937, 80937

Description : Aminoacyl-tRNA synthetase, class II (G/ P/ S/T); Serine-tRNA synthetase, type1, N-terminal [Interproscan].


Gene families : OG_01_0002419 (OrthoFinder) Phylogenetic Tree(s): OG0002419_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002501349.1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cre03.g189400 30786696 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.06 OrthoFinder
Cz01g38170.t1 No alias Aminoacyl-tRNA synthetase, class II (G/ P/ S/T);... 0.07 OrthoFinder
EOD24043 No alias Seryl-tRNA synthetase [Ensembl]. 0.06 OrthoFinder
OT_08G02010.1 No alias Serine-tRNA synthetase, type1, N-terminal;... 0.11 OrthoFinder
PTI_24G00410.1 No alias Serine-tRNA synthetase, type1, N-terminal;... 0.03 OrthoFinder
Sro251_g099270.1 Contig687.g8007 Serine--tRNA ligase 0.03 OrthoFinder
Sro31_g020380.1 Contig420.g5633 Serine--tRNA ligase 0.07 OrthoFinder
Transcript_contig_89332 89332 Serine-tRNA synthetase, type1, N-terminal;... 0.05 OrthoFinder
Vocar.0011s0152.1 32895496 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T);... 0.04 OrthoFinder
XM_003058846.1 MicpuC2_44315, 44315 Serine-tRNA synthetase, type1, N-terminal;... 0.05 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57840.1_8450 PRW57840 Serine-tRNA ligase 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495425.1_1423 KAA8495425 Serine--tRNA ligase, cytoplasmic 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR015866 Ser-tRNA-synth_1_N 1 112
IPR002314 aa-tRNA-synt_IIb 223 412
No external refs found!