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  5. XM_002501037.1

XM_002501037.1 (MICPUN_93773, 93773)


Aliases : MICPUN_93773, 93773

Description : HELP; WD40 repeat [Interproscan].


Gene families : OG_01_0000109 (OrthoFinder) Phylogenetic Tree(s): OG0000109_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002501037.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.33 tig00000042_g15425.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00000042.34 tig00000042_g15425.t1 Calpain-type cysteine protease DEK1 OS=Zea mays 0.01 OrthoFinder
Cz05g14030.t1 No alias HELP; Anaphase-promoting complex subunit 4, WD40 domain;... 0.03 OrthoFinder
Cz11g19130.t1 No alias WD40 repeat; Anaphase-promoting complex subunit 4, WD40... 0.02 OrthoFinder
Dusal.0121s00019.1 33195092 PLAT/LH2 domain [Interproscan]. 0.03 OrthoFinder
Dusal.0424s00009.1 33197344 WD40 repeat; HELP [Interproscan]. 0.02 OrthoFinder
EOD39577 No alias HELP [Interproscan]. 0.04 OrthoFinder
OT_18G00250.1 No alias HELP; WD40 repeat [Interproscan]. 0.08 OrthoFinder
XM_003056890.1 MicpuC2_56546, 56546 PLAT/LH2 domain; HELP [Interproscan]. 0.02 OrthoFinder
XM_003058024.1 MicpuC2_57171, 57171 PLAT/LH2 domain; Pleckstrin homology domain [Interproscan]. 0.05 OrthoFinder
XM_003058808.1 MicpuC2_6133, 6133 Hypothetical protein 0.02 OrthoFinder
XM_003061776.1 MicpuC2_48318, 48318 HELP [Interproscan]. 0.03 OrthoFinder
XM_003062633.1 MicpuC2_4590, 4590 WD40 repeat [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01007604.1_cds_GFH33025.1_27502 HaLaN_32336, GFH33025 WD_REPEATS_REGION domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 111 148
IPR001680 WD40_repeat 528 563
IPR001680 WD40_repeat 806 840
IPR001680 WD40_repeat 1063 1097
IPR001680 WD40_repeat 1300 1333
IPR001680 WD40_repeat 491 517
IPR005108 HELP 713 788
IPR005108 HELP 39 105
No external refs found!