XM_002500717.1 (MICPUN_97217, 97217)

Aliases : MICPUN_97217, 97217

Description : DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA ligase, ATP-dependent, N-terminal [Interproscan].

Gene families : OG_01_0000772 (OrthoFinder) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: XM_002500717.1
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method	Actions
lcl\|LHPG02000018.1_cds_PRW32907.1_3841	PRW32907	DNA ligase 1-like isoform A	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	None	Extended
MF	GO:0003910	DNA ligase (ATP) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Enrichment
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Enrichment
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Enrichment
BP	GO:0006401	RNA catabolic process	IEP	Enrichment
BP	GO:0006402	mRNA catabolic process	IEP	Enrichment
BP	GO:0006413	translational initiation	IEP	Enrichment
BP	GO:0009892	negative regulation of metabolic process	IEP	Enrichment
MF	GO:0009982	pseudouridine synthase activity	IEP	Enrichment
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Enrichment
BP	GO:0010629	negative regulation of gene expression	IEP	Enrichment
BP	GO:0016579	protein deubiquitination	IEP	Enrichment
MF	GO:0016851	magnesium chelatase activity	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
BP	GO:0019439	aromatic compound catabolic process	IEP	Enrichment
MF	GO:0030246	carbohydrate binding	IEP	Enrichment
MF	GO:0030247	polysaccharide binding	IEP	Enrichment
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Enrichment
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Enrichment
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Enrichment
BP	GO:0046700	heterocycle catabolic process	IEP	Enrichment
BP	GO:0048519	negative regulation of biological process	IEP	Enrichment
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	Enrichment
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	Enrichment
BP	GO:0070646	protein modification by small protein removal	IEP	Enrichment
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Enrichment
MF	GO:2001070	starch binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR012310	DNA_ligase_ATP-dep_cent	215	446
IPR012308	DNA_ligase_ATP-dep_N	4	146
IPR012309	DNA_ligase_ATP-dep_C	472	584

External Links

No external refs found!

XM_002500717.1 (MICPUN_97217, 97217)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation