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  5. XM_002499819.1

XM_002499819.1 (MICPUN_79030, 79030)


Aliases : MICPUN_79030, 79030

Description : DNA topoisomerase, type IA, central; TOPRIM domain [Interproscan].


Gene families : OG_01_0001163 (OrthoFinder) Phylogenetic Tree(s): OG0001163_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: XM_002499819.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Cz16g12180.t1 No alias DNA topoisomerase, type IA, central; Zinc finger,... 0.05 OrthoFinder
OT_03G04080.1 No alias Zinc finger, CCHC-type; DNA topoisomerase, type IA,... 0.06 OrthoFinder
PTI_01G08220.1 No alias TOPRIM domain; DNA topoisomerase, type IA, central... 0.02 OrthoFinder
PTI_13G02890.1 No alias Zinc finger, CCHC-type; TOPRIM domain; DNA... 0.01 OrthoFinder
Sro287_g108620.1 Contig252.g3103 Topoisomerase 3-alpha 0.03 OrthoFinder
Vocar.0009s0242.1 32893315 Zinc finger, CCHC-type; TOPRIM domain; DNA... 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60157.1_6321 PRW60157 DNA topoisomerase 3-beta isoform X1 0.02 OrthoFinder
lcl|LHPG02000025.1_cds_PRW20276.1_5743 PRW20276 DNA topoisomerase 3-alpha isoform X2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013497 Topo_IA_cen 168 607
IPR006171 TOPRIM_domain 7 151
No external refs found!