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  5. lcl|BLLF01005284.1_cds_GFH31005.1_25482

lcl|BLLF01005284.1_cds_GFH31005.1_25482 (HaLaN_29949, GFH31005)


Aliases : HaLaN_29949, GFH31005

Description : TRNA-dihydrouridine synthase 3


Gene families : OG_01_0001054 (OrthoFinder) Phylogenetic Tree(s): OG0001054_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: lcl|BLLF01005284.1_cds_GFH31005.1_25482
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.80 tig00000241_g20942.t1 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.01 OrthoFinder
Cre04.g229948 30791118 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.06 OrthoFinder
EOD04070 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
EOD38961 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.02 OrthoFinder
OT_10G01720.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.04 OrthoFinder
Sro767_g199550.1 Contig2377.g19543 Synthase 0.02 OrthoFinder
Transcript_contig_57299 57299 tRNA-dihydrouridine synthase [Interproscan]. 0.01 OrthoFinder
Vocar.0001s1778.1 32885246 E3 ligase, CCCH-type zinc finger; tRNA-dihydrouridine... 0.04 OrthoFinder
XM_002502940.1 MICPUN_66278, 66278 tRNA-dihydrouridine synthase [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0017150 tRNA dihydrouridine synthase activity IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001269 DUS_fam 22 223
No external refs found!