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  5. lcl|BLLF01004313.1_cds_GFH29368.1_23845

lcl|BLLF01004313.1_cds_GFH29368.1_23845 (HaLaN_28014, GFH29368)


Aliases : HaLaN_28014, GFH29368

Description : TRNA-splicing endonuclease positive effector


Gene families : OG_01_0005132 (OrthoFinder) Phylogenetic Tree(s): OG0005132_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01004313.1_cds_GFH29368.1_23845
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
lcl|BLLF01000058.1_cds_GFH06831.1_1308 HaLaN_01535, GFH06831 Regulator of nonsense transcripts 1 0.03 OrthoFinder
lcl|BLLF01000058.1_cds_GFH06832.1_1309 HaLaN_01536, GFH06832 Hypothetical protein 0.03 OrthoFinder
lcl|BLLF01002165.1_cds_GFH22974.1_17451 HaLaN_20518, GFH22974 Hypothetical protein 0.03 OrthoFinder
lcl|BLLF01002165.1_cds_GFH22975.1_17452 HaLaN_20519, GFH22975 Putative helicase MAGATAMA 3 0.05 OrthoFinder
lcl|BLLF01002165.1_cds_GFH22976.1_17453 HaLaN_20520, GFH22976 Regulator of nonsense transcripts 1 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 3 149
No external refs found!