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  5. lcl|BLLF01003906.1_cds_GFH28504.1_22981

lcl|BLLF01003906.1_cds_GFH28504.1_22981 (HaLaN_27007, GFH28504)


Aliases : HaLaN_27007, GFH28504

Description : DNA-directed RNA polymerase subunit


Gene families : OG_01_0002939 (OrthoFinder) Phylogenetic Tree(s): OG0002939_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01003906.1_cds_GFH28504.1_22981
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
EOD27107 No alias Zinc finger, TFIIS-type [Interproscan]. 0.01 OrthoFinder
EOD30178 No alias Zinc finger, TFIIS-type [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18300.1_5798 PRW18300 DNA-directed RNA polymerase I subunit RPA12 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001222 Znf_TFIIS 12 43
No external refs found!