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  5. Cpa|evm.model.tig00021589.28

Cpa|evm.model.tig00021589.28 (tig00021589_g22735.t1)


Aliases : tig00021589_g22735.t1

Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021589.28
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cre24.g755347 30782914 RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder
EOD05883 No alias ATP-dependent RNA helicase [Ensembl]. 0.02 OrthoFinder
EOD10970 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
EOD13289 No alias Domain of unknown function DUF1605; Helicase-associated... 0.02 OrthoFinder
EOD26794 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
EOD28324 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
EOD37846 No alias ATP-dependent RNA helicase [Ensembl]. 0.01 OrthoFinder
OT_01G03120.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.04 OrthoFinder
PTI_02G04770.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.04 OrthoFinder
SymbC1.scaffold4319.1 4319.1 DEAD/DEAH box helicase domain; Domain of unknown... 0.03 OrthoFinder
Transcript_contig_55707 55707 Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
XM_002500528.1 MICPUN_97165, 97165 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492608.1_9301 KAA8492608 Putative pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 1 54
IPR011709 DUF1605 135 171
No external refs found!