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  5. lcl|BLLF01003606.1_cds_GFH27760.1_22237

lcl|BLLF01003606.1_cds_GFH27760.1_22237 (HaLaN_26136, GFH27760)


Aliases : HaLaN_26136, GFH27760

Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0003439 (OrthoFinder) Phylogenetic Tree(s): OG0003439_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01003606.1_cds_GFH27760.1_22237
Cluster HCCA: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000792.35 tig00000792_g4187.t1 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 OrthoFinder
Cre10.g420900 30790232 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 OrthoFinder
Cz12g23200.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Dusal.0096s00002.1 33195824 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
OT_13G02090.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Sro316_g115490.1 Contig2414.g19755 Dependent RNA helicase 0.02 OrthoFinder
Transcript_contig_89254 89254 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Vocar.0016s0046.1 32897876 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.02 OrthoFinder
XM_002503199.1 MICPUN_83076, 83076 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45450.1_1365 PRW45450 DEAD-box ATP-dependent RNA helicase 28 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Enrichment
BP GO:0000723 telomere maintenance IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001932 regulation of protein phosphorylation IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Enrichment
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019900 kinase binding IEP Enrichment
MF GO:0019901 protein kinase binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0042325 regulation of phosphorylation IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0043549 regulation of kinase activity IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0045859 regulation of protein kinase activity IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051338 regulation of transferase activity IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 2 122
IPR001650 Helicase_C 234 302
No external refs found!