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  5. lcl|BLLF01002986.1_cds_GFH26001.1_20478

lcl|BLLF01002986.1_cds_GFH26001.1_20478 (HaLaN_24070, GFH26001)


Aliases : HaLaN_24070, GFH26001

Description : DEAD-box ATP-dependent RNA helicase 29


Gene families : OG_01_0002520 (OrthoFinder) Phylogenetic Tree(s): OG0002520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01002986.1_cds_GFH26001.1_20478
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.32 tig00022075_g23594.t1 Putative DEAD-box ATP-dependent RNA helicase 29... 0.02 OrthoFinder
Cz05g10330.t1 No alias Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.05 OrthoFinder
Dusal.0175s00005.1 33199720 DBP10, C-terminal; Helicase, C-terminal; DEAD/DEAH box... 0.01 OrthoFinder
EOD14476 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.03 OrthoFinder
OT_06G03920.1 No alias Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.05 OrthoFinder
PTI_06G03220.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Sro1505_g278170.1 Contig474.g6439 Dependent RNA helicase 0.03 OrthoFinder
XM_002499996.1 MICPUN_78680, 78680 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
XM_003057837.1 MicpuC2_16058, 16058 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33126.1_3489 PRW33126 DEAD-box ATP-dependent RNA helicase 29 isoform X1 isoform A 0.04 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492805.1_2541 KAA8492805 ATP-dependent RNA helicase DDX54 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003724 RNA helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 316 427
IPR011545 DEAD/DEAH_box_helicase_dom 83 280
IPR012541 DBP10_C 728 777
No external refs found!