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  5. lcl|BLLF01002839.1_cds_GFH25525.1_20002

lcl|BLLF01002839.1_cds_GFH25525.1_20002 (HaLaN_23505, GFH25525)


Aliases : HaLaN_23505, GFH25525

Description : Component of cytosolic 80S ribosome and 60S large subunit


Gene families : OG_01_0002935 (OrthoFinder) Phylogenetic Tree(s): OG0002935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01002839.1_cds_GFH25525.1_20002
Cluster HCCA: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021127.127 tig00021127_g18807.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
PTI_04G05480.1 No alias 60S ribosomal protein L6E [Interproscan]. 0.02 OrthoFinder
Vocar.0013s0019.1 32896343 60S ribosomal protein L6E [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57743.1_8428 PRW57743 60S ribosomal L6 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495926.1_1924 KAA8495926 60S ribosomal protein L6 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 119 224
No external refs found!