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  5. lcl|BLLF01002372.1_cds_GFH23824.1_18301

lcl|BLLF01002372.1_cds_GFH23824.1_18301 (HaLaN_21508, GFH23824)


Aliases : HaLaN_21508, GFH23824

Description : DNA topoisomerase 1


Gene families : OG_01_0002413 (OrthoFinder) Phylogenetic Tree(s): OG0002413_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01002372.1_cds_GFH23824.1_18301
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Dusal.0007s00039.1 33201185 DNA topoisomerase I, catalytic core, eukaryotic-type;... 0.02 OrthoFinder
EOD31015 No alias DNA topoisomerase type I [Ensembl]. 0.04 OrthoFinder
OT_12G02000.1 No alias DNA topoisomerase I, catalytic core, eukaryotic-type;... 0.03 OrthoFinder
Sro1053_g235820.1 Contig4118.g31453 DNA topoisomerase 1 0.03 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20584.1_5407 PRW20584 DNA topoisomerase 1-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR013500 TopoI_cat_euk 136 177
IPR008336 TopoI_DNA-bd_euk 12 50
IPR008336 TopoI_DNA-bd_euk 49 132
No external refs found!