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  5. lcl|BLLF01002296.1_cds_GFH23539.1_18016

lcl|BLLF01002296.1_cds_GFH23539.1_18016 (HaLaN_21164, GFH23539)


Aliases : HaLaN_21164, GFH23539

Description : Ubiquitin-60S ribosomal L40


Gene families : OG_01_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01002296.1_cds_GFH23539.1_18016
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Dusal.0023s00044.1 33198053 Sde2, N-terminal ubiquitin domain [Interproscan]. 0.03 OrthoFinder
Dusal.0814s00004.1 33191920 Ubiquitin-associated domain; Ubiquitin-like domain... 0.02 OrthoFinder
EOD04877 No alias Ubiquitin-like domain [Interproscan]. 0.01 OrthoFinder
Sro381_g130930.1 Contig161.g1826 Polyubiquitin (Fragment) 0.02 OrthoFinder
Sro874_g214200.1 Contig589.g7371 Ubiquitin 0.01 OrthoFinder
Vocar.0024s0156.1 32890529 Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60289.1_4387 PRW60289 Ubiquitin-40S ribosomal S27a 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004017 adenylate kinase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 22 69
No external refs found!