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  5. lcl|BLLF01002183.1_cds_GFH23054.1_17531

lcl|BLLF01002183.1_cds_GFH23054.1_17531 (HaLaN_20606, GFH23054)


Aliases : HaLaN_20606, GFH23054

Description : RNA_pol_sigma70 domain-containing protein


Gene families : OG_01_0000286 (OrthoFinder) Phylogenetic Tree(s): OG0000286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01002183.1_cds_GFH23054.1_17531
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000002.1_cds_KAA8496639.1_368 KAA8496639 RNA polymerase sigma factor SigA 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 48 94
No external refs found!