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  5. lcl|BLLF01002159.1_cds_GFH22946.1_17423

lcl|BLLF01002159.1_cds_GFH22946.1_17423 (HaLaN_20485, GFH22946)


Aliases : HaLaN_20485, GFH22946

Description : Component of cytosolic 80S ribosome and 60S large subunit


Gene families : OG_01_0002264 (OrthoFinder) Phylogenetic Tree(s): OG0002264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|BLLF01002159.1_cds_GFH22946.1_17423
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.53 tig00022075_g23614.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder
Cre09.g397697 30781440, RPL4 Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder
Cz16g02120.t1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.06 OrthoFinder
Dusal.0242s00016.1 33196725 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.03 OrthoFinder
EOD06962 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.02 OrthoFinder
OT_16G01500.1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.05 OrthoFinder
PTI_00G01550.1 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.05 OrthoFinder
PTI_12G00050.1 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.04 OrthoFinder
Sro621_g176640.1 Contig1511.g13781 60S ribosomal protein L4 0.05 OrthoFinder
SymbC1.scaffold968.3 968.3 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.02 OrthoFinder
TP05G01880.1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.03 OrthoFinder
Vocar.0009s0214.1 32893255 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.02 OrthoFinder
XM_002506518.1 MICPUN_96004, 96004 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.03 OrthoFinder
XM_003063189.1 MicpuC2_45929, 45929 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33309.1_3617 PRW33309 60S ribosomal L4 isoform B 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495171.1_3701 KAA8495171 60S ribosomal protein L4-A 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 1 168
IPR025755 Ribos_L4_C_dom 181 255
No external refs found!